{"help":"Return the metadata of a dataset (package) and its resources. :param id: the id or name of the dataset :type id: string","success":true,"result":[{"id":"a44dd777-07ec-4ef2-9eea-b20b74a3cb41","name":"andriizayacibmsagebrushsimulations-code-zaiats-et-al-2022-ecology-and-evolution","title":"andriizayac\/ibm_sagebrush_simulations: Code for Zaiats et al. 2022 Ecology and Evolution","author":"Andrii Zaiats","author_email":"andriizaiats@u.boisestate.edu","maintainer":"RCDS Data Repository","maintainer_email":"rcds-web@uidaho.edu","notes":"\u003Cp\u003EThis code was used for the simulation study in: Zaiats, A., Requena-Mullor, J.M., Germino, M.J., Forbey, J.S., Richardson, B.A., Caughlin, T.T. (2022) Spatial models can improve the experimental design of field-based transplant gardens by preventing bias due to neighborhood crowding. Ecology and Evolution, \u003Ca href=\u0022https:\/\/doi.org\/10.1002\/ece3.9630\u0022\u003Ehttps:\/\/doi.org\/10.1002\/ece3.9630\u003C\/a\u003E\u003C\/p\u003E\n\u003Cp\u003E\u003Cstrong\u003EAbstract\u003C\/strong\u003E\u003Cbr \/\u003E\nField-based transplant gardens, including common and reciprocal garden experiments, are a powerful tool for studying genetic variation and gene-by-environment interactions. These experiments assume that individuals within the garden represent independent replicates growing in a homogenous environment. Plant neighborhood interactions are pervasive across plant populations and could violate assumptions of transplant garden experiments. We demonstrate how spatially explicit models for plant\u2013plant interactions can provide novel insights on genotypes\u0027 performance in field-transplant garden designs. We used individual-based models, based on data from a sagebrush (Artemisia spp.) common garden, to simulate the impact of spatial plant\u2013plant interactions on between-group differences in plant growth. We found that planting densities within the range of those used in many common gardens can bias experimental outcomes. Our results demonstrate that higher planting densities can lead to inflated group differences and may confound genotypes\u0027 competitive ability and genetically underpinned variation. Synthesis. We propose that spatially explicit models can help avoid biased results by informing the design and analysis of field-based transplant garden experiments. Alternately, including neighborhood effects in post hoc analyses of transplant garden experiments is likely to provide novel insights into the roles of biotic factors and density dependence in genetic differentiation.\u003C\/p\u003E\n\u003Cp\u003E\u003Cstrong\u003EData Use\u003C\/strong\u003E\u003Cbr \/\u003E\n\u003Cem\u003ELicense\u003C\/em\u003E\u003Cbr \/\u003E\nOpen Access-No license specified\u003Cbr \/\u003E\n\u003Cem\u003ERecommended Citation\u003C\/em\u003E\u003Cbr \/\u003E\nZaiats A. 2022. andriizayac\/ibm_sagebrush_simulations: Code for Zaiats et al. 2022 Ecology and Evolution (v1.0). Zenodo. \u003Ca href=\u0022https:\/\/doi.org\/10.5281\/zenodo.7411125\u0022\u003Ehttps:\/\/doi.org\/10.5281\/zenodo.7411125\u003C\/a\u003E\u003C\/p\u003E\n\u003Cp\u003E\u003Cstrong\u003EFunding\u003C\/strong\u003E\u003Cbr \/\u003E\nUS National Science Foundation and Idaho EPSCoR: OIA-1757324\u003C\/p\u003E\n","url":"https:\/\/dkan.nkn.uidaho.edu\/dataset\/andriizayacibmsagebrushsimulations-code-zaiats-et-al-2022-ecology-and-evolution","state":"Active","log_message":"Edited by awchild.","private":true,"revision_timestamp":"Wed, 09\/06\/2023 - 14:02","metadata_created":"Wed, 04\/26\/2023 - 12:07","metadata_modified":"Wed, 09\/06\/2023 - 14:02","creator_user_id":"6cc16f2c-77c2-4d12-ac06-56bbb86b535b","type":"Dataset","resources":[{"id":"76ea8ffc-81d9-46f6-9055-33b1e0b84a16","revision_id":"","url":"https:\/\/doi.org\/10.5281\/zenodo.7411125","description":"","format":"html","state":"Active","revision_timestamp":"Wed, 04\/26\/2023 - 12:08","name":"Data Access via Zenodo | andriizayac\/ibm_sagebrush_simulations: Code for Zaiats et al. 2022 Ecology and Evolution","mimetype":"html","size":"","created":"Wed, 04\/26\/2023 - 12:07","resource_group_id":"bff301ea-b742-427b-954e-e6a326c2ea45","last_modified":"Date changed  Wed, 04\/26\/2023 - 12:08"}],"tags":[{"id":"2ddf177c-15c4-4755-a442-4d656453e890","vocabulary_id":"2","name":"common garden"},{"id":"e3efeca1-8342-4f0e-9b30-9fcc27f68097","vocabulary_id":"2","name":"density dependence"},{"id":"4f01e398-c875-4b3c-85cc-bc02e932395c","vocabulary_id":"2","name":"gene-by-environment interaction"},{"id":"c9e61905-c7a7-4d4b-bdab-958826202e46","vocabulary_id":"2","name":"local adaptation"},{"id":"ce7b186a-81b6-4d4f-95c3-54e67321bfd7","vocabulary_id":"2","name":"quantitative genetics"},{"id":"7671cdd2-ca2a-4579-9310-6f6e6906f0e1","vocabulary_id":"2","name":"transplant garden"}],"groups":[{"description":"\u003Cp\u003EBoise State University is a Carnegie-classified doctoral research university and our students have opportunities to work with talented and accomplished faculty on research, even as undergraduates.  Our students go into the workforce better prepared, with expertise outside of their major by taking advantage of opportunities such as certificates in business anthropology, entrepreneurship, or cybersecurity.  \u003C\/p\u003E\n\u003Cp\u003ELearn more at \u003Ca href=\u0022https:\/\/www.boisestate.edu\/\u0022\u003Ehttps:\/\/www.boisestate.edu\/\u003C\/a\u003E\u003C\/p\u003E\n","id":"bff301ea-b742-427b-954e-e6a326c2ea45","image_display_url":"https:\/\/dkan.nkn.uidaho.edu\/sites\/default\/files\/bsu_logo.jpg","title":"Boise State University","name":"group\/boise-state-university"},{"description":"\u003Cp\u003EThe primary objective of Idaho EPSCoR is to stimulate research in niche areas that can become fully competitive in the disciplinary and multidisciplinary research programs of the National Science Foundation and other relevant agencies. Idaho EPSCoR provides support for sustainable increases in Research and Development capacity and advances science and engineering capabilities within the state. \u003C\/p\u003E\n\u003Cp\u003EVisit them at \u003Ca href=\u0022https:\/\/www.idahoepscor.org\u0022\u003Ehttps:\/\/www.idahoepscor.org\u003C\/a\u003E\u003C\/p\u003E\n","id":"e696b239-9ecb-412e-b032-03a75b2b9fd6","image_display_url":"https:\/\/dkan.nkn.uidaho.edu\/sites\/default\/files\/Idaho_epscor_logo_no_white_background.png","title":"Idaho EPSCoR","name":"group\/idaho-epscor"},{"description":"\u003Cp\u003EGEM3 is an NSF EPSCoR research program seeking to understand how genetic diversity and phenotypic plasticity affect species response to environmental change, shaping both population response and adaptive capacity.\u003C\/p\u003E\n\u003Cp\u003EVisit them at: \u003Ca href=\u0022https:\/\/www.idahogem3.org\u0022\u003Ehttps:\/\/www.idahogem3.org\u003C\/a\u003E\u003C\/p\u003E\n","id":"1812a312-11a4-492d-960b-9a78b4abfe0c","image_display_url":"https:\/\/dkan.nkn.uidaho.edu\/sites\/default\/files\/GEM3_nov5_logo.png","title":"EPSCoR GEM3","name":"group\/epscor-gem3"}]}]}